Top 13 Hotels in Marathon, Florida

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Located within the Florida Keys, Marathon is a unique travel destination in one of Florida’s top vacation spots, perfect for boating, deep-sea fishing, reef diving, and snorkeling. This is also a tropical place where people come to spend time on the beach and learn about marine habitats under the Florida sunshine. For accommodations, there are lots of options to choose from based on your budget and travel style.

To help you plan your trip, here are the top hotels in Marathon, Florida.

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Tranquility Bay Beachfront Resort
Private beach houses to truly get away

Tranquility Bay Beachfront Resort

The Tranquility Bay Beachfront Resort offers standard guest rooms and private beach houses with their own entrances and no shared spaces, so you can feel like you’re truly getting away from it all. This top Florida Keys resort has three pools, a private beach, and onsite watersports, so it will be easy to embrace the island atmosphere. Guests can dine at the Butterfly Café onsite, a top-rated Marathon restaurant specializing in seafood dishes and sticky toffee pudding. There’s a tiki bar where you can enjoy cocktails and smoothies, as well as a fitness room and a putting green by Nicklaus Design. In-room spa services are available for guests if you’re looking to schedule an herbal scrub, facial, or body mask treatment during your stay.

Banana Bay Resort & Marina
Soak up the views from the comfort of your room.

Banana Bay Resort & Marina

Spread across 10 acres of land along the Gulf Coast, the Banana Bay Resort & Marina has 59 guestrooms. The resort is decorated with tropical charm, just like any resort in a Florida beach town should be. This is a good option for solo travelers, families, and couples. Some of the rooms have private balconies, and all of them are pet-friendly. Stop by The Pointe Bar for cocktails at sunset or the Tiki Bar for afternoon drinks by the pool. You’ll have convenient access to the private marina onsite, which has 34 boat slips and can accommodate boats up to 56 feet long. This is an excellent place if you want to try watersports, such as jet skiing and kayaking, during your vacation.

Isla Bella Beach Resort
Wake up to paradise here

Isla Bella Beach Resort

With 24 oceanfront acres, the Isla Bella Beach Resort is an exceptional place to stay in Marathon, Florida. It has a beach bar, palm trees, five pools, and easy access to world-class fishing. The décor here has a contemporary glamour vibe, and there are plenty of opportunities for adventure out on the water. You can dine at the onsite Polynesian-inspired restaurant with spectacular views. There is also a spa where you can be pampered right at the resort and a marketplace for quick bites and essential items. The resort is a popular place for weddings in the Florida Keys.

Fairfield Inn & Suites Marathon Florida Keys
Your unforgettable tropical vacation starts here

Fairfield Inn & Suites Marathon Florida Keys

The Fairfield Inn & Suites Marathon Florida Keys offers highly-rated accommodations that are halfway between Key West and the romantic Islamorada Fishing Village. In addition to the comfortable guest rooms, this Marriott-brand hotel provides complimentary breakfast, a fitness center, two outdoor heated pools, and Wi-Fi. You can enjoy cocktails and live entertainment at Sparky’s Landing Tiki Bar and Restaurant, which overlooks the marina. Dogs up to 25 pounds are welcome to stay with you when you pay an additional fee.  

Seascape Resort & Marina
A hidden gem off the beaten path

Seascape Resort & Marina

Located a little off the beaten path but directly on the Atlantic Ocean, the Seascape Resort & Marina has 12 island-inspired rooms for overnight stays. There are rooms for solo travelers and groups of up to six people. The resort has its own private marina with a dock and boat launch, and it offers kayaks, paddleboards, fishing rods, and bikes for guests to use. The resort has a large pool and barbecue facilities to make your sun-filled getaway memorable.

Hampton Inn Marathon - Florida Keys
hilton.com
Tropical vibes and swimming opportunities

Hampton Inn Marathon - Florida Keys

At the Hampton Inn Marathon – Florida Keys, you can plan to check off one of the top things to do in the Keys: swim with the dolphins. t is located right by the Dolphin Research Center, Sombrero Reef Marine Sanctuary, and Turtle Hospital. Guests at this Marathon, Florida hotel enjoy complimentary breakfast and Wi-Fi during their stay. Other perks include free parking, an outdoor pool, fitness center, business center, and pet-friendly rooms. Up to two dogs or cats can stay with you here for a $50 pet fee.

Faro Blanco Resort & Yacht Club
A full-service marina right at the resort

Faro Blanco Resort & Yacht Club

Book a stay at the Faro Blanco Resort & Yacht Club and enjoy one of its 125 rooms situated along Marathon’s waterfront. The hotel is well-known for its historic lighthouse and a full-service marina. You can even book your fishing charters and Jeep rentals right from the resort. Guests receive complimentary Wi-Fi and onsite parking. You can dine onsite at the Lighthouse Grill, which features a signature daily catch and ocean-inspired menu. Poolside service is also available daily starting at 11 am. In addition to relaxing vacations, the Faro Blanco Resort & Yacht Club is also a popular place for weddings and corporate events.

Tropical Cottages
Quaint furnishings and pastel colors

Tropical Cottages

Tropical Cottages features uniquely decorated cottages painted in pastel colors. The interior spaces are decorated with a tropical vibe and there are many outdoor areas to enjoy. There are budget-friendly standard rooms and complimentary coffee served each morning. Stand-alone cottages are available here for maximum privacy. Grab a bite to eat at the on-site La Isla Taco Grill food truck that serves food for both lunch and dinner. There’s also a tiki bar where you can enjoy drinks in a laid-back atmosphere. If you need anything during your stay, there’s the friendly staff to answer all your questions.

Kingsail Resort
Take a dip and enjoy the beautiful scenery

Kingsail Resort

Located at mile marker 50 ½ along the bay side of U.S. 1, the Kingsail Resort is a recommended hotel and resort in Marathon. It is near the top local attractions and has many amenities, including a pool, lagoon, boat ramp, and complimentary morning coffee on the dock. All rooms have cable TV, air conditioning, refrigerators, and microwaves. You have various room options to choose from, including two-room suites that sleep up to six people. There are also efficiencies with full kitchenettes and rooms with screened-in lanais and seating areas.

Courtyard Marathon Florida Keys
A tranquil and luxurious waterfront option

Courtyard Marathon Florida Keys

You’ll have all the luxuries of a full-service resort when you stay at the Courtyard Marathon Florida Keys. This resort has two onsite pools, nightly beach bonfires, a game lawn, and live music. This is a top choice for families because of a Caribbean-style signature event called Eventide that is hosted a half hour before sunset. The property has two onsite restaurants, a fitness center, bike, kayak, and jet ski rentals, and beach gear. The hotel also has over 14,000 square feet of indoor and outdoor venue space for special events.

Captain Pip's Marina & Hideaway
An amazing location with comfy rooms

Captain Pip's Marina & Hideaway

You’ll find clean and comfortable rooms at Captain Pip’s Marina & Hideaway, which offers guest rooms, efficiencies, and one- and two-bedroom apartments. The amenities here include Wi-Fi, coffee, a pool, housekeeping, and more. Visit Captain Pip’s Marina & Hideaway’s website to read descriptions of the various rooms available. You can add an 18-foot or 24-foot boat rental to your stay for a little extra fun. Snorkeling excursions to some of the Key’s best snorkeling spots are also available. Other activities you can experience while staying at Captain Pip’s include kayaking, jet skiing, paddleboarding, bicycling, and chartering a boat.

Sea Dell Motel
A friendly, "Old Keys" vibe

Sea Dell Motel

The Sea Dell Motel gives visitors an “Old Keys” experience in a lush and tropical setting. It is a family-friendly motel that has rooms with refrigerators, microwaves, and coffeemakers. Guests can swim in the freshwater pool and enjoy the barbecue and picnic areas outside. Other offerings at the Sea Dell Motel are fast Wi-Fi, an electric car-charging station, and a washer and dryer on the premises. You’ll be just a mile and a half from Sombrero Beach when you stay here, which is one of the best beaches in all of the Florida Keys. Other attractions nearby include the Dolphin Research Center (one of the best places to see dolphins in Florida), Crane Point Hammock, historic sites, and nature trails.

Siesta Motel
Quiet, clean, and affordable

Siesta Motel

For affordable accommodations in Marathon, Florida, consider booking a room at the Siesta Motel. This is a quiet, clean, and comfortable place to be that offers dog-friendly rooms. Options to choose from are standard rooms, large efficiency rooms, small efficiency rooms, and small studios. The motel’s website lists the amenities for each accommodation option. There is a pool onsite with outdoor seating, high-speed Wi-Fi, flat-screen TVs, and free outdoor parking. Families can check out the children’s play and entertainment areas to keep little ones busy.

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